I did the swap 2 years ago. You'll need the following off a donor car.
T5 trans and bellhousing
5 speed pedal assembly
5 speed shifter bezel
Keep your auto crossmember, it's the same as a 5 speed one.
5 speed computer is a MUST
5 speed driveshaft
lower shift boot
all the bolts for the lower shift boot,
new parts
clutch kit
flywheel (stock ford one will do fine)
throwout bearing
pilot bearing
Go with ford racing for the bearings.
ford clutch cable.
there is a kit from MaximumMotorsports that has a ford clutch cable, firewall adjuster and aluminum clutch quadrant. I have the exact same kit, and it's the best you can get.
you'll need a shifter, stock or short throw, up to you
Besides that stuff, you should be good to go.
When you swap the 5 speed in, you'll have to cut out the hole for the shifter slightly bigger.