I put a T56 Magnum in my 04 Mach 1 last winter. At that same time I aslo did a McLeod lightened billet steel flywheel with RXT clutch...other stuff too but doesn't really apply to this...anyway...
The noise I experience is what is known as "gear rollover". It sounds like rattling and is due to the reduced mass from the lighter weight clutch / flywheel assembly. Due to there is less rotational weight, it has less inertia, which keeps that gear mesh loaded against the front profile of the gear teeth. Gears 1 - 4 will cause this noise at low RPM / high load. If I keep RPM's above 3k there is no noise. Gears 5 & 6 don't have that issue as *I think* they are on a dfferent rail...not sure on that one.
Anyway, it's the best shifting performance / HD transmission I've ever driven, but if I'm trying to creep / be (somewhat lol) quiet, yeah...it can be noisey.