Just tell them what your plan is, and see what they recommend.
They'll most likely want to check them for cracks and see if they are flat. I priced a complete overhaul of GT40 heads at a shop here for $650 (cleaning plus some machine work), that's using all my parts (springs/valves). If you have them do port work it will just add to the cost.
I would have them disassemble, clean/tank, maybe run them on the machine to deck the heads, then re-assemble. See if they recommend anything else.
What's the budget?