Little update.
Took the speaker off the driver door and double checked the connections. Turns out I DID have it hooked to the LEDs instead of the audio input.. However upon switching them Nothing happened.
Didn't get into the rear speakers yet.
Popped off the window switches on the drivers side out of curiosity, tried switching them and stuff nothing worked... HOWEVER I did manage to accidentally short it while removing the switch with the blade of a screw driver, few sparks flew, but no fuse was blown. Good news is there is power getting to the switches. Bad news is that means it's a motor or the switches. I'm going to grab the switches off Josh's car when I go up to Dez on Saturday and I will see if they are the problem. I did notice that there is a extra harness on my doors that is not being used. I beleive this is for a box for the 1 touch function on the windows... I am not sure. The door panels I have don't have that box in them, could this module being missing prevent the windows from working? Is there a way to bypass the module? I really don't care for 1 touch down if it means I have to go hunting for a buy the modules. I'd like to just bypass it if thats possible.
Did not get a chance to check my Vac line by the firewall, will be doing that tomorrow. I'll have an hour after school to play with the car.
Today is a good day for the door locks... Both the drivers side and passenger side decided to work today.
Replaced ALL of my interior fuses, all of my small engine bay fuses, and I put in my missing #6 and #16 Maxi fuses that where missing. Checked all the other maxi fuses visually and used my fuse tester. All are good.
So we now know:
Fuses can now be crossed off the list
Speakers - Power is leaving head unit and producing sound, audio is not making it to the speakers via normal routing. Possibly need to bypass the amp. Also need to check wiring for head unit. There is a single black and single blue wire from the stock side of the harness, I'm assuming one of these is the amp turn on or whatever it's called wire, What do I need to connect it to? This may fix speaker problem..
Windshield wipers - Power gets to module, makes clicking sounds
Door locks - More than likely the switches, will replace on Sunday to test. They are always getting power so the switches must be going out.
Power windows - black box behind door panel is missing, harness is in door and not connected. May cause the windows to not receive power. Is there a way to bypass this box?
HVAC - Turns out it only works on high setting and NOT low or any inbetween, also only blows through defrosters... Will check Vac line by pass side firewall tomorrow.