For these models you have to replace the whole hinge, I did it on my mustang, removed the door, lining it up was the only hard part. If I am not mistaken they are a one piece unlike older models where there was a pin.
Had the same deal. Me and my dad replaced the hinges and bushings, made it worse. I brought it to the body shop and they put shims in on the bottom hinge. Closes like a new door now. Keep in mind, my car was in an accident twice so I'm sure thats why the new hinges didn't work.