When I went from 11" to 13" on my race car, I did a lot of research and decided to go with the revolution brake kit (or similar) for a couple of reasons. #1 that I can get a replacement Wilwood caliper for the front for $150 from Summit/Jegs. #2 brake pad cost is SIGNIFICANTLY less than any OEM caliper (including the Cobra R Brembo) and the pads last twice as long. Having the 13" Wilwood setup payed for itself the 1st season in brake costs.
The 2000 Cobra R setup was an option as well, however the pad costs were more, and if I shelled a caliper, I could not find a source to purchase one caliper, if needed. New cost was a little stout, but you can find the R hardware for about $1000 if you look long and hard.
JeremyAlan, take your Cobra to a road course before you try and prep it. You'll be pleasantly surprised at how well that Cobra setup actually works. It will take at least 10 times to the track before you really start learning how to drive and push that car to its limits. Then you will know better where to concentrate your efforts. Make sure your cooling system is 100%, get some performance pads at all 4 corners, ultra grip summer tires, drain/fill all brake fluid, and go have some fun.